Package: flocker 1.0-0

flocker: Flexible Occupancy Estimation with Stan

Fit occupancy models in 'Stan' via 'brms'. The full variety of 'brms' formula-based effects structures are available to use in multiple classes of occupancy model, including single-season models, models with data augmentation for never-observed species, dynamic (multiseason) models with explicit colonization and extinction processes, and dynamic models with autologistic occupancy dynamics. Formulas can be specified for all relevant distributional terms, including detection and one or more of occupancy, colonization, extinction, and autologistic depending on the model type. Several important forms of model post-processing are provided. References: Bürkner (2017) <doi:10.18637/jss.v080.i01>; Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Socolar & Mills (2023) <doi:10.1101/2023.10.26.564080>.

Authors:Jacob B. Socolar [aut, cre, cph], Simon C. Mills [aut], Paul-Christian Bürkner [ctb]

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Bug tracker:https://github.com/jsocolar/flocker/issues

On CRAN:

17 exports 26 stars 2.80 score 76 dependencies 15 scripts 127 downloads

Last updated 6 months agofrom:cca300aa04. Checks:OK: 7. Indexed: yes.

Exports:fitted_flockerflockflocker_stancodeflocker_standataget_flocker_priorget_Zlog_inv_logitlog_lik_flockerlog1m_inv_logitloo_compare_flockerloo_flockermake_flocker_datamake_flocker_data_augmentedmake_flocker_data_dynamicmake_flocker_data_staticpredict_flockersimulate_flocker_data

Dependencies:abindassertthatbackportsbayesplotBHbootbridgesamplingbrmsBrobdingnagcallrcheckmateclicodacodetoolscolorspacedescdigestdistributionaldplyrfansifarverfuturefuture.applygenericsggplot2ggridgesglobalsgluegridExtragtableinlineisobandlabelinglatticelifecyclelistenvloomagrittrMASSMatrixmatrixStatsmgcvmunsellmvtnormnleqslvnlmenumDerivparallellypillarpkgbuildpkgconfigplyrposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelreshape2rlangrstanrstantoolsscalesStanHeadersstringistringrtensorAtibbletidyselectutf8vctrsviridisLitewithr